rnetBasic: An S4 class containg the information of a basic rnet. These...

Description Slots

Description

Inherits from 'rnetInput'

Slots

Data

A dataframe containing the dataset.

L1

The L1 penalty

V_set

The vertex set

n

A square matrix of n_ij, the number of valid pairs used to estimate the edge between i and j.

V_ommitted

The names of vertices removed from the rnet due to low sample size or forced to 0.

V_metadata

A Vector containing the attribute names assigned to the rnet's vertices.

E_metadata

A vector containing the attribute names assinged to the rnet's edges.

Zeros

A list of edges forced to zero due to small sample size or declared by user.

Sigma

The empirical correlation matrix

Theta

The penalized precision matrix (Sigma^-1)

Omega

The penalized partial correlation matrix. Also the weighted adajacency matrix used for the network.

A

The adjacency matrix (omega_ij != 0)

R

An igraph object derived from Omega

Layout

A k' x 2 matrix containing the x & y coords for the vertices for plotting. k' indicates that some of the k vertices declared may have been removed.


EpidemiologyDVM/Rnets documentation built on Dec. 8, 2017, 12:27 a.m.