API for ErasmusMC-CCBC/ProteoDisco
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences
| Global functions | |
|---|---|
| .checkReferenceAnchor | Man page Source code |
| .checkValidity.Import | Source code |
| ProteoDiscography-class | Man page |
| ProteoDiscographyExample.hg19 | Man page |
| checkProteotypicFragments | Man page |
| checkProteotypicFragments,ProteoDiscography-method | Man page |
| exportProteoDiscography | Man page Source code |
| generateJunctionModels | Man page Source code |
| generateProteoDiscography | Man page Source code |
| getDiscography | Man page |
| getDiscography,ProteoDiscography-method | Man page |
| importGenomicVariants | Man page Source code |
| importGenomicVariants.MAF | Man page Source code |
| importGenomicVariants.VCF | Man page Source code |
| importSpliceJunctions | Man page Source code |
| importTranscriptSequences | Man page Source code |
| incorporateGenomicVariants | Man page Source code |
| mutantTranscripts | Man page |
| mutantTranscripts,ProteoDiscography-method | Man page |
| print.ProteoDiscography | Source code |
| setGenomicSequences | Man page |
| setGenomicSequences,ProteoDiscography-method | Man page |
| setMutantTranscripts | Man page |
| setMutantTranscripts,ProteoDiscography-method | Man page |
| setTxDb | Man page |
| setTxDb,ProteoDiscography-method | Man page |
| summary.ProteoDiscography | Source code |
