getDiscography: Retrieve imported genomic variants, splice-junctions and...
In ErasmusMC-CCBC/ProteoDisco: Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences
getDiscography R Documentation
Retrieve imported genomic variants, splice-junctions and manual sequences.
Description
Retrieve imported genomic variants, splice-junctions and manual sequences.
Usage
getDiscography(x)
## S4 method for signature 'ProteoDiscography'
getDiscography(x)
Arguments
x
(ProteoDiscography): ProteoDiscography object.
Value
Return a list of imported records, per category (genomic variants, splice-junctions and manual sequences).
Examples
# Import example ProteoDiscography (hg19)
data('ProteoDiscographyExample.hg19', package = 'ProteoDisco')
ProteoDiscographyExample.hg19 <- setTxDb(ProteoDiscographyExample.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene)
ProteoDiscographyExample.hg19 <- setGenomicSequences(ProteoDiscographyExample.hg19, BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)
# Retrieve the imported records.
getDiscography(ProteoDiscographyExample.hg19)
ErasmusMC-CCBC/ProteoDisco documentation built on Dec. 9, 2022, 8:41 a.m.
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| getDiscography | R Documentation |
Retrieve imported genomic variants, splice-junctions and manual sequences.
Description
Retrieve imported genomic variants, splice-junctions and manual sequences.
Usage
getDiscography(x) ## S4 method for signature 'ProteoDiscography' getDiscography(x)
Arguments
x |
(ProteoDiscography): ProteoDiscography object. |
Value
Return a list of imported records, per category (genomic variants, splice-junctions and manual sequences).
Examples
# Import example ProteoDiscography (hg19)
data('ProteoDiscographyExample.hg19', package = 'ProteoDisco')
ProteoDiscographyExample.hg19 <- setTxDb(ProteoDiscographyExample.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene)
ProteoDiscographyExample.hg19 <- setGenomicSequences(ProteoDiscographyExample.hg19, BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)
# Retrieve the imported records.
getDiscography(ProteoDiscographyExample.hg19)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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