mutantTranscripts: Adds mutant transcript sequences to the ProteoDiscography in...

In ErasmusMC-CCBC/ProteoDisco: Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences

Adds mutant transcript sequences to the ProteoDiscography in the appropriate slot

Description

Adds mutant transcript sequences to the ProteoDiscography in the appropriate slot

Usage

mutantTranscripts(x)

Arguments

x	(ProteoDiscography): ProteoDiscography.

Value

Return all incorporated mutant transcripts (list of DataFrame).

Examples

# Import example ProteoDiscography (hg19)
data('ProteoDiscographyExample.hg19', package = 'ProteoDisco')
ProteoDiscographyExample.hg19 <- setTxDb(ProteoDiscographyExample.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene)
ProteoDiscographyExample.hg19 <- setGenomicSequences(ProteoDiscographyExample.hg19, BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)

# Retrieve all generated mutant transcripts.
mutantTranscripts(ProteoDiscographyExample.hg19)

ErasmusMC-CCBC/ProteoDisco documentation built on Dec. 9, 2022, 8:41 a.m.