formatStation: Format Station Data

In EricArcher/PAMsbuoy: Manipulation and filtering for PAM (Passive Acoustic Monitoring) data collected from sonobuoys

Description

Format data for a station from an list of tables read from a PAMGuard SQLlite database.

Usage

formatStation(
  db,
  buoyPositions = NULL,
  overrideError = FALSE,
  dateFormat = "%Y-%m-%d %H:%M:%S",
  extraCols = NULL,
  ...
)

formatBuoyPosition(db)

formatBuoyCalibration(db, position)

formatBuoyEffort(db)

formatDetections(db, buoys, extraCols = NULL)

convertBinaryChannel(x)

Arguments

db	list of data frames from PAMGuard SQLlite database
buoyPositions	optional argument, can be a data frame containing position information for buoy deployments or a file path. Data frame must have columns Buoy, UTC, Latitude, and Longitude. If buoy positions are present both in the database and this dataframe, positions from this data frame will be used. File path must be to a csv file to be read in as a data frame.
overrideError	station formatting will stop if insufficient buoy position data is present. Set this to TRUE to override this behaviour and continue loading the station and mark problematic buoys with error=TRUE.
dateFormat	character string giving date-time format as used by strptime. This is used to format the dates of data supplied by buoyPositions.
extraCols	character vector listing any extra columns to keep while loading detection data.

Author(s)

Eric Archer [e-mail], Taiki Sakai [e-mail]

EricArcher/PAMsbuoy documentation built on March 3, 2021, 5:56 a.m.