Man pages for Eucrow/sapmuebase
Base utils to use in SAP MUE
| addInfluenceAreaVariable | function to create a influence area variable from the... |
| areas_influencia | List of influence areas |
| arte | List of gears |
| backupScripts | Backup scripts and related files. |
| caladero_origen | Fishing ground - Origin |
| catchesPercentileUP | Create dataset with catches percentile for every species. |
| checkAllFormatVariables | Function to check all the variables format of a dataframe... |
| checkFormatVariable | Function to check the correct format of a variable of a... |
| checkStructureFile | Check the correct structure file of tallas_x_up SIRENO... |
| convertSNtoLogical | Convert logical varible in spanish (S/N) to logical... |
| especies | Species |
| especies_mezcla | Mixed species |
| especies_no_mezcla | Non mixed species |
| especies_prioritarias | Priority species |
| especies_sexadas | Sexed species |
| estrato_rim | List of ESTRATO_RIM available |
| estrato_rim_arte | ESTRATO_RIM - Gear |
| estrato_rim_origen | ESTRATO_RIM - Origin |
| exportCsvSAPMUEBASE | export csv with SAPMUE format |
| exportListToCsv | Export to csv a list of dataframes |
| exportListToXlsx | Export to xlsx a list of dataframes |
| fixReportSirenoFiles | Fix erroneous format of the reports from SIRENO in the... |
| formato_variables | Variables format |
| formatVariableTypes | Format the variables of a dataframe obtained by the RIM and... |
| getSGPVesselId | Get vessel identification code of Spanish SGP (Secretaría... |
| getVariableTypes | Get the variable types of the RIM and OAB files downloaded... |
| humanize | function to create new description columns from encoded... |
| humanizeVariable | Humanize variable Add new column with the description of a... |
| importCsvSAPMUE | import csv with usually format used in SAPMUE |
| importIPDFile | Import RIM IPD file |
| importOABAccidentals | Import SIRENO accidentals catches report from on-board... |
| importOABCatches | Import SIRENO catches report from on-board sampling in the... |
| importOABCatchesCECAF | Import SIRENO catches report from on-board sampling in the... |
| importOABFiles | Import the SIRENO on board reports from ICES project. |
| importOABFilesCECAF | Import the SIRENO on board reports from CECAF project. |
| importOABHauls | Import SIRENO haul report from on-board sampling in the ICES... |
| importOABHaulsCECAF | Import SIRENO haul report from on-board sampling in the CECAF... |
| importOABLengths | Import SIRENO lengths report from on-board sampling in the... |
| importOABLengthsCECAF | Import SIRENO haul report from on-board sampling in the CECAF... |
| importOABLitter | Import SIRENO litter report from on-board sampling in the... |
| importOABTrips | Import SIRENO trips report from on-board sampling in the ICES... |
| importOABTripsCECAF | Import SIRENO trips report from on-board sampling in the... |
| importRIMCatches | Import SIRENO catches report from at-market sampling in the... |
| importRIMCatchesInLengths | Import SIRENO catches in lengths report from at-market... |
| importRIMFiles | Import the SIRENO at-market reports from ICES project. |
| importRIMLengths | Import SIRENO lengths report from at-market sampling in the... |
| isVesselActive | Indicates if vessel is active in the Spanish SGP (Secretaría... |
| metier_caladero_dcf | Relation between METIER_DCF and CALADERO_DCF |
| metier_coherence | Relation between METIER_DCF, CALADERO_DCF, ESTRATO_RIM,... |
| origen | Fishing origin of the samples |
| p97_capturas_historico | Historical percentile 97 range by species. |
| p99_capturas_historico | Historical percentile 99 range by species. |
| prescripciones_oab_2021_coherencia | Prescriptions coherence. |
| prescripciones_rim_mt2_coherencia | Prescriptions coherence. |
| procedencia | Sampling institution |
| puerto | Port |
| rango_tallas_historico_caladero | Historical size range by species and fishing ground. |
| relacion_variables | To improve legibility, some field names from the reports... |
| removeSppFrom_Sp | Remove " spp" abbreviation in species. |
| separateDataframeByInfluenceArea | Separate a dataframe by influence area |
| spBelongsToTaxon | Check in WORMS if one species belongs to a taxon. |
| speciesBelongToTaxon | Check in WORMS if species belongs to a taxon. |
| split_line | Split a line read by the function fix_import_files. Used in... |
| tipo_muestreo | Type of sample |
| variables_to_humanize | Variables to humanize |
| vesselInSGPFleet | Detect if a vessel exists in Spanish SGP (Secretaría General... |
