Man pages for Euphrasiologist/VCVglmm
Manipulating model outputs from MCMCglmm and lme4 objects, usually involving variance-covariance matrices
| Bbar | Given a tree, return the average root to tip distance between... |
| calc_pvals | Calculating p-values for the lme4 Gaussian mixed model. |
| densMode | Calculate x and y axis for peak density on MCMC objects... |
| g_lmerfixplot | ggplot2 ouptut of Tukey comparisons for lmer models |
| MCMCfixplot | ggplot2 output of the fixed effects from a MCMCglmm model |
| MCMCranef | Visualise the random effect posterior distributions |
| MCMCRepnorm2 | Calculate variance explained by a random variable... |
| MCMCReppois | Calculate variance explained by a random variable... |
| posterior.sd | Posterior standard deviations for fixed (and random) effects |
| Solapply | Apply a function over each of the stored posterior solutions... |
| specify_decimal | Specify the number of decimal places Please see... |
| traces | Lattice output of the MCMC chains from the fixed and random... |
| ultm | Convert a phylo object to an inverse distance matrix that... |
| VarExpl.mer | Calculate variance explained from a lme4 model |
| VCVdensity | Visualise the VCV of a MCMCglmm model |
| Wald.test | Performing Wald tests on MCMCglmm fixed effects |
| Wald.test.auto | Performing Wald tests on MCMCglmm fixed effects automatically |
