cleanGenes: Clean genes
In Evatar/geneScrapeR: Scrape NCBI databases

Description Usage Arguments Value Examples

Converts the entrez gene ids into the approved gene symbol and counts the number of times each gene is mentioned.

1	cleanGenes(geneList)

geneList

A list containing the Entrez gene ids for all of the genes found in each article.

A tibble. The first column is the gene name and the second column is the number of times that gene is mentioned.

pmids <- scrapeIDs(dataBase = 'pubmed',
                   term = '(vivax malaria[MeSH Terms]) AND (folic acid antagonists[MeSH Terms])')

geneids <- extractGenes(IDs = pmids,
                        nCores = 2)

geneNames <- cleanGenes(geneList = geneids)