Description Usage Arguments Value Examples
Extracts the gene ids from the information scraped from the PubTator website.
1 | extractGenes(IDs, nCores = 2, nTries = 5)
|
IDs |
A list of article ids from the NCBI website. |
nCores |
An integer for the number of cores to use to mine the NCBI articles. |
nTries |
An integer for the number of times to attempt to connect to the NCBI website. |
A list. Each element in the list is also a list. It contains the entrez gene ids for all the genes found in each abstract.
1 2 3 4 5 6 | pmids <- scrapeIDs(dataBase = 'pubmed',
term = '(vivax malaria[MeSH Terms]) AND (folic acid antagonists[MeSH Terms])')
geneNames <- extractGenes(IDs = pmids,
nCores = 2,
nTries = 5)
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