API for EvoLandEco/eve
Evolution Emulator, phylogenetically dependent
| Global functions | |
|---|---|
| .onLoad | Source code |
| L2ED | Man page Source code |
| L2ED_cpp | Man page Source code |
| L2NND | Man page Source code |
| L2Phi | Man page Source code |
| L2Phi_cpp | Man page Source code |
| L2phylo2 | Man page Source code |
| bind_raw | Man page Source code |
| bind_replication | Man page Source code |
| calculate_CI | Source code |
| calculate_CI_alt | Man page |
| calculate_branch_colless | Source code |
| calculate_phylogenetic_evenness | Source code |
| calculate_tree_distance | Source code |
| calculate_tree_stats | Source code |
| check_folder | Man page Source code |
| check_parallel_arguments | Source code |
| check_pars_list | Source code Source code |
| check_path | Man page Source code |
| check_raw_data | Source code |
| check_stats_names | Source code |
| combo_to_tibble | Source code |
| create_annotation | Source code |
| create_indexes_by_group | Source code |
| ddd_rtree | Source code |
| download_ftp_file | Man page Source code |
| draw_daughter_lineages | Man page Source code |
| edd_combo_maker | Man page Source code |
| edd_fetch | Man page Source code |
| edd_fetch_logs | Man page Source code |
| edd_fetch_results | Man page Source code |
| edd_get_ed | Source code |
| edd_get_edmax | Source code |
| edd_go | Man page Source code |
| edd_load | Man page Source code |
| edd_load_split | Man page Source code |
| edd_merge | Man page Source code |
| edd_message_info | Source code |
| edd_pars_check | Source code |
| edd_phylogenetic_evenness | Source code |
| edd_plot | Man page Source code |
| edd_plot_balance | Man page |
| edd_plot_branch | Man page |
| edd_plot_eds | Man page Source code |
| edd_plot_grouped_eds | Man page Source code |
| edd_plot_grouped_las | Man page Source code |
| edd_plot_grouped_ltt | Man page Source code |
| edd_plot_grouped_mus | Man page Source code |
| edd_plot_grouped_temporal_dynamics | Man page |
| edd_plot_histree | Source code |
| edd_plot_las | Man page Source code |
| edd_plot_ltt | Man page Source code |
| edd_plot_mus | Man page Source code |
| edd_plot_nltt | Man page Source code |
| edd_plot_stats | Man page Source code |
| edd_plot_stats_graph | Source code |
| edd_plot_temporal_dynamics | Man page |
| edd_plot_tree | Man page Source code |
| edd_rtree | Source code |
| edd_sample_event | Source code |
| edd_sim | Man page Source code |
| edd_sim_batch | Man page Source code |
| edd_sim_nr | Source code |
| edd_sim_rep | Man page Source code |
| edd_stat | Man page Source code |
| edd_stat_phylogenetic_evenness | Source code |
| edd_stat_rtree | Man page Source code |
| edd_sum_rates | Source code |
| edd_summarize | Source code |
| edd_summarize_temporal_dynamics | Source code |
| edd_update_lamu | Source code |
| extract_parameters | Source code |
| extract_tree | Source code |
| extract_which | Man page Source code |
| filter_small_tree | Source code |
| find_best_rep_ids | Source code |
| find_extinct | Source code |
| find_pars_id | Source code |
| find_rep_id | Source code |
| get_stats_names | Source code |
| get_tree_sizes | Source code |
| job_detail | Man page Source code |
| job_detail_parser | Source code |
| job_parameter | Man page Source code |
| job_status | Man page Source code |
| job_status_parser | Source code |
| l_to_newick_ed | Man page Source code |
| l_to_newick_ed_cpp | Source code |
| l_to_phylo_ed | Man page Source code |
| list_files_ftp | Man page Source code |
| list_files_ftp_worker | Source code |
| mark_extinct_tips | Source code |
| match_raw | Man page Source code |
| match_time_step | Man page Source code |
| match_which | Man page Source code |
| pars_to_title | Source code |
| phylo2mpd | Man page Source code |
| phylo2pd | Man page Source code |
| reconstruct_temporal_dynamics | Source code |
| reduce_element | Man page Source code |
| reverse_l_table | Source code |
| sample2 | Man page Source code |
| sample_end_state | Source code |
| sample_tree_metrics | Source code |
| save_result | Man page Source code |
| save_with_parameters | Source code |
| save_with_rates | Source code |
| save_with_rates2 | Source code |
| save_with_rates_and_index_name | Source code |
| save_with_rates_offset | Source code |
| search_tree | Man page Source code |
| stat_histree | Man page Source code |
| swap_layers | Man page Source code |
| tally_by_group | Source code |
| transform_data | Source code |
| upload_to_ftp | Man page Source code |
| upload_to_ftp_worker | Source code |
