Files in FASTGenomics/fastgenomicsR
Facilitates the use of the FASTGenomics backend.
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/app.R
R/defaults.R
R/io.R
R/parameters.R
R/process.R
R/seurat.R
R/summary.R
R/validation.R
README.md
fastgenomicsR.Rproj
inst/json/manifest_schema.json
man/App.Rd
man/Process-class.Rd
man/Process.Rd
man/file.exists-InputFile-method.Rd
man/get_input_file_mapping.Rd
man/map_input.Rd
man/read.table-InputFile-method.Rd
man/read_seurat-Process-method.Rd
man/to_absolute_path.Rd
man/validate_manifest.Rd
man/write.table-ANY-OutputFile-method.Rd
man/write_seurat-Process-method.Rd
man/write_summary.Rd
tests/apps/missing_files/.gitignore
tests/apps/runtime_error/Dockerfile
tests/apps/runtime_error/LICENSE
tests/apps/runtime_error/LICENSE-THIRD-PARTY
tests/apps/runtime_error/README.md
tests/apps/runtime_error/manifest.json
tests/apps/validation_error/Dockerfile
tests/apps/validation_error/LICENSE
tests/apps/validation_error/LICENSE-THIRD-PARTY
tests/apps/validation_error/README.md
tests/apps/validation_error/manifest.json
tests/apps/validation_error/sample_app/Dockerfile
tests/apps/validation_error/sample_app/LICENSE
tests/apps/validation_error/sample_app/LICENSE-THIRD-PARTY
tests/apps/validation_error/sample_app/README.md
tests/apps/validation_error/sample_app/manifest.json
tests/apps/working/Dockerfile
tests/apps/working/LICENSE
tests/apps/working/LICENSE-THIRD-PARTY
tests/apps/working/README.md
tests/apps/working/manifest.json
tests/apps/working/summary.md.j2
tests/apps/working_seurat/Dockerfile
tests/apps/working_seurat/LICENSE
tests/apps/working_seurat/LICENSE-THIRD-PARTY
tests/apps/working_seurat/README.md
tests/apps/working_seurat/manifest.json
tests/apps/working_seurat/summary.md.j2
tests/data/missing_files/.gitignore
tests/data/no_mapping_file/config/parameters.json
tests/data/no_mapping_file/data/cell_metadata.csv
tests/data/no_mapping_file/data/expression_matrix.csv
tests/data/no_mapping_file/data/gene_metadata.csv
tests/data/no_mapping_file/data/optional_existing
tests/data/no_mapping_file/output/.gitignore
tests/data/no_mapping_file/summary/.gitignore
tests/data/non_existing/config/input_file_mapping.json
tests/data/non_existing/config/parameters.json
tests/data/non_existing/data/.gitignore
tests/data/non_existing/output/.gitignore
tests/data/non_existing/summary/.gitignore
tests/data/working_1/config/input_file_mapping.json
tests/data/working_1/config/parameters.json
tests/data/working_1/data/cell_metadata.csv
tests/data/working_1/data/expression_matrix.csv
tests/data/working_1/data/gene_metadata.csv
tests/data/working_1/data/optional_existing
tests/data/working_1/output/.gitignore
tests/data/working_1/summary/.gitignore
tests/data/working_1_no_mapping/config/parameters.json
tests/data/working_1_no_mapping/data/cell_metadata.csv
tests/data/working_1_no_mapping/data/expression_matrix.csv
tests/data/working_1_no_mapping/data/gene_metadata.csv
tests/data/working_1_no_mapping/data/optional_existing
tests/data/working_1_no_mapping/output/.gitignore
tests/data/working_1_no_mapping/summary/.gitignore
tests/data/working_2/config/input_file_mapping.json
tests/data/working_2/config/parameters.json
tests/data/working_2/data/.gitignore
tests/data/working_2/output/.gitignore
tests/data/working_2/summary/.gitignore
tests/data/working_3/config/input_file_mapping.json
tests/data/working_3/config/parameters.json
tests/data/working_3/data/cell_metadata.csv
tests/data/working_3/data/expression_matrix.csv
tests/data/working_3/data/gene_metadata.csv
tests/data/working_3/data/optional_existing
tests/data/working_3/output/.gitignore
tests/data/working_3/summary/.gitignore
tests/data/working_env/config/parameters.json
tests/data/working_env/data/cell_metadata.csv
tests/data/working_env/data/expression_matrix.csv
tests/data/working_env/data/gene_metadata.csv
tests/data/working_env/data/optional_existing
tests/data/working_env/output/.gitignore
tests/data/working_env/summary/.gitignore
tests/data/working_seurat/config/input_file_mapping.json
tests/data/working_seurat/config/parameters.json
tests/data/working_seurat/data/seurat.rds
tests/data/working_seurat/output/seurat.rds
tests/data/working_seurat/summary/.gitignore
tests/data/working_seurat_files/data/cell_metadata.tsv
tests/data/working_seurat_files/data/expression_matrix.tsv
tests/data/working_seurat_files/data/gene_metadata.tsv
tests/testthat.R
tests/testthat/test-env.R
tests/testthat/test-io.R
tests/testthat/test-parameters.R
tests/testthat/test-process.R
tests/testthat/test-seurat.R
