Man pages for FASTGenomics/fastgenomicsR
Facilitates the use of the FASTGenomics backend.
| App | Create an app representation based on the contents of the... |
| file.exists-InputFile-method | Checl if a given InputFile exists. |
| get_input_file_mapping | 1. try the env variable 2. try the... |
| map_input | uses mapping list (coming from input_file_mapping) to get the... |
| Process | Initializes a FgProcess and holds all information your app... |
| Process-class | Represents an FastGenomics Process. |
| read_seurat-Process-method | Reads a Seurat object from the input file mapping. Note that... |
| read.table-InputFile-method | Reads an FG Input File as a Table |
| to_absolute_path | adds a new attribute $path containing the absolute path to... |
| validate_manifest | Checks the manifest against the schema |
| write_seurat-Process-method | Writes a Seurat object to the output file mapping. Note that... |
| write_summary | Write an markdown summary using knitr |
| write.table-ANY-OutputFile-method | Write an FASTGenomics Output as table |
