FINCHmed/acTFs
activated Transcription Factors

Package index
Search the FINCHmed/acTFs package
Vignettes
Functions
3
Source code
1
Man pages
2
Home
/
GitHub
/
FINCHmed/acTFs
/
acTFs: activated Transcription Factors

acTFs: activated Transcription Factors
In FINCHmed/acTFs: activated Transcription Factors

Description Usage Examples

Description

To identify differentially activated TFs by examing the changing of their target genes.

Usage

1
GETacTFS(DEGup,DEGdown,totalgenenum,FDRcutoff)

Examples

1
2
3
4
5
6
DEGup=c("EFCAB6","MAP2K6","GNPDA2")
DEGdown=c("LURAP1L","NPAP1","FGFR1")
result=GETacTFS(DEGup,DEGdown,totalgenenum=20250,FDRcutoff=0.05)
head(result$allTFs)
head(result$sigTFS)
head(result$sigTFsDEGnet)

FINCHmed/acTFs documentation built on Feb. 23, 2022, 12:03 a.m.

Related to acTFs in FINCHmed/acTFs...

FINCHmed/acTFs index
README.md

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close