data_ChIP: ChIP-seq dataset

In FPZhang2015/CCR: Fit the correspondence curve regression

Description

A dataset containing the scores of six algorithms, MACS, SPP, Peakseq, Cisgenome, Quest and SISSRS.

Usage

data("data_ChIP")

Format

A data frame with 36000 observations on the following 3 variables.

y1

a numeric vector

y2

a numeric vector

x

a factor with levels cisgenome macs peakseq quest sissrs spp

Source

Li, Q., et al.(2011).

References

Li, Q., Brown, J. B., Huang, H., Bickel, P. J., et al. (2011). Measuring reproducibility of high-throughput experiments. The Annals of Applied Statistics 5, 1752-1779.

Examples

data(data_ChIP)

## Not run: 
data(data_ChIP)
## estimate
par.ini = c(1, 0, -0.1, 0, 0, 0.5)  # initial value
fit <- ccrFit(cbind(y1, y2)~x, data = data_ChIP,
             link = 'loglog', par.ini = par.ini)
    
## End(Not run)

FPZhang2015/CCR documentation built on May 28, 2019, 12:38 p.m.