ModAlkAnilineSeq-functions: Functions for ModAlkAnilineSeq

Description Usage Arguments Details Value Examples

Description

All of the functions of Modifier and the ModifierSet classes are inherited by the ModAlkAnilineSeq and ModSetAlkAnilineSeq classes.

Usage

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## S4 replacement method for signature 'ModAlkAnilineSeq'
settings(x) <- value

## S4 method for signature 'ModAlkAnilineSeq'
aggregateData(x)

## S4 method for signature 'ModAlkAnilineSeq'
findMod(x)

## S4 method for signature 'ModAlkAnilineSeq'
getDataTrack(x, name, type, ...)

## S4 method for signature 'ModAlkAnilineSeq,GRanges'
plotDataByCoord(
  x,
  coord,
  type = c("ends", "scoreNC", "scoreSR"),
  window.size = 15L,
  ...
)

## S4 method for signature 'ModAlkAnilineSeq'
plotData(
  x,
  name,
  from = 1L,
  to = 30L,
  type = c("ends", "scoreNC", "scoreSR"),
  ...
)

## S4 method for signature 'ModSetAlkAnilineSeq,GRanges'
plotDataByCoord(
  x,
  coord,
  type = c("scoreNC", "scoreSR", "ends"),
  window.size = 15L,
  ...
)

## S4 method for signature 'ModSetAlkAnilineSeq'
plotData(
  x,
  name,
  from = 1L,
  to = 30L,
  type = c("scoreNC", "scoreSR", "ends"),
  ...
)

Arguments

x

a Modifier or a ModifierSet object. For more details see also the man pages for the functions mentioned below.

value

See settings

coord, name, from, to, type, window.size, ...

See plotData.

Details

ModAlkAnilineSeq specific arguments for plotData:

Value

Examples

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data(msaas,package="RNAmodR.AlkAnilineSeq")
maas <- msaas[[1]]
settings(maas)
aggregate(maas)
modify(maas)
getDataTrack(maas, "1", mainScore(maas))

FelixErnst/RNAmodR.AlkAnilineSeq documentation built on Jan. 25, 2021, 3:58 a.m.