DESeq_PCA: DESeq_PCA

In Feng-Zhang/RNAseqFlow:

DESeq_PCA

Description

This function would plot PCA based on DESeqDataSet object and save as pdf and png format

Usage

DESeq_PCA(
  dds,
  group_name = "condition",
  label = FALSE,
  output_dir = ".",
  filename = NULL
)

Arguments

dds	a matrix with row name
group_name	the number of colData to split case and control group
label	A logical value to plot label of sample
output_dir	the path of output
filename	NULL or a character, the filename of output. When value is NULL, the figures are not saved.

Examples

## Not run: 
input = createCountPhe()
dds = DEseqObj(input[[1]],input[[2]],ref_level="untreated")
DESeqObjPCA(dds)

## End(Not run)

Feng-Zhang/RNAseqFlow documentation built on Sept. 10, 2022, 7:13 a.m.