DESeq_res: DESeqRes

In Feng-Zhang/RNAseqFlow:

DESeqRes

Description

This function would get the results based on DESeqDataSet object

Usage

DESeq_res(dds, fold_change_line = 1, adj_pvalue_line = 0.05, ...)

Arguments

dds	a matrix with row name
fold_change_line	a numeric, the threshold to define significant fold change
adj_pvalue_line	a numeric, the threshold of significant log2(fold change)
...	Aavailable arguments to be passed to results

Value

a dataframe

Examples

## Not run: 
input = createCountPhe()
dds = DEseqObj(input[[1]],input[[2]],ref_level="untreated")
res = DESeqRes(dds)

## End(Not run)

Feng-Zhang/RNAseqFlow documentation built on Sept. 10, 2022, 7:13 a.m.