pathwayanalysis_relabel_significant_clusters: Relabel some pathway clusters with biologically relevant...
In FerrenaAlexander/FerrenaBulkRNAseq: Pipeline for analysis of bulkRNAseq data
View source: R/pathwayanalysis.R
pathwayanalysis_relabel_significant_clusters R Documentation
Relabel some pathway clusters with biologically relevant names
Description
Pathways often share overlap in their genes, which are identified in this pipeline as clusters. Typically, pathways will group together as a "functional module" that can be identified based on literature and biological knowledge, so this function labels the clusters as such. This is usually kind of difficult and takes some time inspecting genes and pathway names/descriptions in each cluster.
Usage
pathwayanalysis_relabel_significant_clusters(
pathwayanalysis_out,
clusterlabels
)
Arguments
pathwayanalysis_out
output from the pathwayanalysis() function.
clusterlabels
character vector; labels to give to the clusters of pathways. If null, will use generic names.
Value
will return a list, similar in format to the output of pathwayanalysis function, but with updated object in element 1 and cluster labels in element 3.
FerrenaAlexander/FerrenaBulkRNAseq documentation built on Oct. 16, 2022, 8:18 a.m.
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View source: R/pathwayanalysis.R
| pathwayanalysis_relabel_significant_clusters | R Documentation |
Relabel some pathway clusters with biologically relevant names
Description
Pathways often share overlap in their genes, which are identified in this pipeline as clusters. Typically, pathways will group together as a "functional module" that can be identified based on literature and biological knowledge, so this function labels the clusters as such. This is usually kind of difficult and takes some time inspecting genes and pathway names/descriptions in each cluster.
Usage
pathwayanalysis_relabel_significant_clusters( pathwayanalysis_out, clusterlabels )
Arguments
pathwayanalysis_out |
output from the |
clusterlabels |
character vector; labels to give to the clusters of pathways. If null, will use generic names. |
Value
will return a list, similar in format to the output of pathwayanalysis function, but with updated object in element 1 and cluster labels in element 3.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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