et: resume function for ET algorithm punctuation

In FilipePintoReis/KARS_project: Histocompatibility functios for organ transplantation

resume function for ET algorithm punctuation

Description

Ordering of waitlisted candidates for a given donor and according to ETKAS algorithm.

Usage

et(
  iso = TRUE,
  dABO = "A",
  dA = c("1", "2"),
  dB = c("15", "44"),
  dDR = c("1", "4"),
  donor.age = 65,
  data = candidates,
  month = 2.78,
  mm0 = 400,
  mm1 = 333.33,
  mm2 = 266.67,
  mm3 = 200,
  mm4 = 133.33,
  mm5 = 66.67,
  mm6 = 0,
  df.abs = cabs,
  hlaA = hlaApt,
  hlaB = hlaBpt,
  hlaDR = hlaDRpt,
  abo_freq = ABOpt,
  n = 2,
  check.validity = TRUE
)

Arguments

iso	A logical value for isogroupal compatibility.
dABO	A character value with ABO blood group (env$valid.blood.groups).
dA	donor's HLA-A typing.
dB	donor's HLA-B typing.
dDR	donor's HLA-DR typing.
donor.age	A numeric value with donor's age.
data	A data frame containing demographics and medical information for a group of waitlisted transplant candidates.
month	A numeric value with the punctuation for each month (between env$month.points.minimum and env$month.points.maximum)
mm0	A numeric value with points for 0 HLA mm on ETKAS points table
mm1	A numeric value with points for 1 HLA mm on ETKAS points table
mm2	A numeric value with points for 2 HLA mm on ETKAS points table
mm3	A numeric value with points for 3 HLA mm on ETKAS points table
mm4	A numeric value with points for 4 HLA mm on ETKAS points table
mm5	A numeric value with points for 5 HLA mm on ETKAS points table
mm6	A numeric value with points for 6 HLA mm on ETKAS points table
df.abs	A data frame with candidates' antibodies.
hlaA	A data frame with HLA-A allele frequencies
hlaB	A data frame with HLA-B allele frequencies
hlaDR	A data frame with HLA-DR allele frequencies
abo_freq	A data frame with ABO blood group frequencies
n	A positive integer to slice the first candidates.
check.validity	Logical to decide whether to validate input.

Value

An ordered data frame with columns cPRA, HI, pointsET, SP, AM and 'mmHLA'.

Examples

et(iso = TRUE, dABO = "A",
dA = c("1","2"), dB = c("15","44"), dDR = c("1","4"),
donor.age = 65,
data = candidates, month = 2.78,
mm0 = 400, mm1 = 333.33, mm2 = 266.67, mm3 = 200,
mm4 = 133.33, mm5 = 66.67, mm6 = 0,
df.abs = cabs,
hlaA = hlaApt, hlaB = hlaBpt, hlaDR = hlaDRpt,
abo_freq = ABOpt,
n = 2,
check.validity = TRUE)

FilipePintoReis/KARS_project documentation built on July 11, 2022, 9:19 a.m.