txscore: TRANSPLANTSCORE (Tx Score)

In FilipePintoReis/KARS_project: Histocompatibility functios for organ transplantation

TRANSPLANTSCORE (Tx Score)

Description

Returns the estimated 5-year event (mortality or graft failure combined outcome) probability as described by Molnar, el al (2017).

Usage

txscore(
  recipient.age = 20,
  recipient.race = "White",
  recipient.causeESRD = "Other",
  recipient.dialysis = 12,
  recipient.diabetes = FALSE,
  recipient.coronary = FALSE,
  recipient.albumin = 1.5,
  recipient.hemoglobin = 10,
  donor.age = 30,
  donor.diabetes = "Absence",
  donor.ECD = FALSE,
  mmHLA_A = 0,
  mmHLA_B = 0,
  mmHLA_DR = 0
)

Arguments

recipient.age	A numeric value with recipient's age
recipient.race	A character value with recipient's race from the options: 'White', 'Black', 'Hispanic', 'Other'
recipient.causeESRD	A numeric value with recipient's cause of End-Stage Renal Disease, with options: 'Other', 'Diabetes', 'Hypertension', 'Glomerulonephritis', 'Cystic disease'
recipient.dialysis	A numeric value with recipient's time on dialysis (months)
recipient.diabetes	A logical value with recipient's diabetic status
recipient.coronary	A logical value with recipient's coronary artery disease status
recipient.albumin	A numeric value with recipient's albumin (g/dL)
recipient.hemoglobin	A numeric value with recipient's hemoglobin (g/dL)
donor.age	A numeric value with donor's age
donor.diabetes	A logical value with donor's diabetic status, with options: 'Absence', 'Presence', 'Unknown'
donor.ECD	A logical value regarding Extended Criteria Donor
mmHLA_A	A numeric value (0, 1, 2) with the number of HLA-A mismatchs
mmHLA_B	A numeric value (0, 1, 2) with the number of HLA-B mismatchs
mmHLA_DR	A numeric value (0, 1, 2) with the number of HLA-DR mismatchs

Value

5 year probability for combined outcome of mortality or graft failure

Source

https://balima.shinyapps.io/scoreTx/

Examples

txscore(recipient.age = 20,
recipient.race = "White", #insurance = 0,
recipient.causeESRD = "Other",
recipient.dialysis = 12, recipient.diabetes = FALSE,
recipient.coronary = FALSE, recipient.albumin = 1.5,
recipient.hemoglobin = 10, donor.age = 30,
donor.diabetes = "Absence",
donor.ECD = FALSE, #mmHLA = "0",
mmHLA_A = 0, mmHLA_B = 0, mmHLA_DR = 0)

FilipePintoReis/KARS_project documentation built on July 11, 2022, 9:19 a.m.