pkgdown/favicon/docs.r

In Flavjack/fieldbook: Tools and Statistical Procedures in Plant Science

# -------------------------------------------------------------------------
# Configuration & R packages for documents --------------------------------
# -------------------------------------------------------------------------
#> author .: Flavio Lozano-Isla (lozanoisla.com)
#> date   .: 2021-07-17
# -------------------------------------------------------------------------

# -------------------------------------------------------------------------
# Packages ----------------------------------------------------------------
# -------------------------------------------------------------------------

cran <- c("knitr", "inti", "gsheet")

suppressPackageStartupMessages({
  for (pkg in cran) { 
    if( !require(pkg, character.only = T) ) {
      install.packages(pkg)
      library(pkg, character.only = T)
    } 
  }
})

remove(cran, pkg)

# -------------------------------------------------------------------------
# Knitr options -----------------------------------------------------------
# -------------------------------------------------------------------------

knitr::opts_chunk$set(
    fig.align = "center" # Center images in the export file
  , out.width = "98%" # Figure width in html
  , echo = FALSE # Avoid print code in the export file
  , message = FALSE # Avoid print messages in the export file
  , warning = FALSE # Avoid print warnings in the export file
  , collapse = TRUE # Collapse text output into source blocks
  )

# -------------------------------------------------------------------------
# Compile options ---------------------------------------------------------
# -------------------------------------------------------------------------

options(
    OutDec= "." # Use "." instead of "," in the decimal values
  , scipen = 99 # Avoid use "6e-04"
  , knitr.kable.NA = "" # NA values will appear as empty cell
  , knitr.table.format = "pipe" # Format for export tables
  , citr.use_betterbiblatex = FALSE # For zotero addin 
  )