qc_heatmap: Data Visualisation

View source: R/plot.r

qc_heatmapR Documentation

Data Visualisation

Description

Generate visualisations of raw data

Usage

qc_heatmap(
  dds,
  pc_x = 1,
  pc_y = 2,
  family = "norm",
  title = "QC Visualisation",
  header = "\n\n##",
  param,
  caption = print
)

Arguments

dds

The DESeq2::DESeqDataSet object

pc_x

The default choice for which principal component to plot on the x axis

pc_y

The default choice for which principal component to plot on the y axis

family

Choice of PCA method

title

Data Visualisation

header

The markdown prefix that should precede any section

param

A parameter-set

caption

The function to use to create captions

Details

Plot heatmaps of the raw data, along with plots of the samples projected onto various slices of the PCA space.

Value

A list (invisible) of ggplot2 objects

Author(s)

Gavin Kelly


FrancisCrickInstitute/DESdemonA documentation built on Jan. 2, 2023, 8:08 p.m.