Man pages for FranzKrah/rGUIDANCE
rGUIDANCE – alignment confidence score computation in R
| addMSA | Add MSA to scores matrix (for developers) |
| filterMSA | Filtering of the base MSA using guidance scores |
| guidance | MSA Reliability Assessment with GUIDANCE |
| guidance2 | MSA Reliability Assessment with GUIDANCE2 |
| guidanceAA | Create Objects of Class "guidanceAA" |
| guidanceAA-class | An S4 Class to represent Amino Acid Alignments with Quality... |
| guidanceDNA | Create Objects of Class "guidanceDNA" |
| guidanceDNA-class | An S4 Class to represent DNA Alignments with Quality Scores |
| HoT | Heads or Tails Alignment Reliability |
| initCounter | Initialize counters matrix (for developers) |
| msa_set_score | Compare reference MSA with alternative MSA(s) |
| recodeMSA | Cmatrix calculation (for developers) |
| rev_DNA | Reverse DNA Sequences of class DNAbin or AAbin |
| scores | Score Calculation from Guidance Objects |
