sadata-class: sa_encode.R
In Fraternalilab/DCDencode: Encode DCD trajectory into Structural Alphabet sequences
Description
Encode a protein structure with the M32K25 structural alphabet.
Details
Given a PDB structure and trajectory, this function will fit C-alpha
coordinates of all consecutive 4-residue fragments with the canonical
fragments of the M32K25 structural alphabet, selecting the optimal
(lowest RMSD) fragment in each case.
sadata: An S4 class for Structural Alphabet (SA) data.
Slots
fragment_letters:Prototype fragment letters forming SA.
fragment_coordinates:Coordinates of prototype fragments.
Fraternalilab/DCDencode documentation built on March 17, 2021, 10:12 p.m.
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Description
Encode a protein structure with the M32K25 structural alphabet.
Details
Given a PDB structure and trajectory, this function will fit C-alpha coordinates of all consecutive 4-residue fragments with the canonical fragments of the M32K25 structural alphabet, selecting the optimal (lowest RMSD) fragment in each case. sadata: An S4 class for Structural Alphabet (SA) data.
Slots
fragment_letters:Prototype fragment letters forming SA.
fragment_coordinates:Coordinates of prototype fragments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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