est_radius_rqa: Estimate Radius without building a recurrence matrix

In FredHasselman/casnet: A Toolbox for Studying Complex Adaptive Systems and Networks

Estimate Radius without building a recurrence matrix

Description

Find a fixed radius without building the recurrence matrix.

Usage

est_radius_rqa(
  y1 = NULL,
  y2 = NULL,
  AUTO = NULL,
  method = "Euclidean",
  startRadius = NULL,
  targetValue = 0.05,
  tol = 0.01,
  maxIter = 100,
  theiler = NA,
  histIter = FALSE,
  standardise = c("mean.sd", "median.mad", "none")[3],
  radiusOnFail = c("tiny", "huge", "percentile")[3],
  silent = FALSE,
  useParallel = TRUE,
  doEmbed = TRUE
)

Arguments

y1	A numeric vector or time series
y2	A numeric vector or time series for cross recurrence
AUTO	Auto-recurrence? (default = FALSE)
method	Distance measure to use. Any option that is valid for argument method of proxy::dist(). Type proxy::pr_DB$get_entries() to see a list of all the options. Common methods are: ⁠"Euclidean", "Manhattan", "Minkowski", "Chebysev"⁠ (or the same but shorter: ⁠"L2","L1","Lp", "max"⁠ distance). To use the shape based distance for phase-based recurrence use "SBD" (default = "Euclidean")
startRadius	The starting value for the radius (default = SD of time series values)
targetValue	When argument type is set to "fixed", the value represents the target value for the measure in targetMeasure (default = RR = .05).
tol	Tolerance for achieving targetValue for targetMeasure (default = 0.01)
maxIter	If type = "fixed": Maximum number of iterations to reach targetValue.
theiler	Size of theiler window (default 0)
histIter	Return iteration history? (default = FALSE)
standardise	Standardise y if type == "optimal"
radiusOnFail	Radius to return when search fails ⁠"tiny" = 0 + ,Machine.double.eps⁠, this will likely cause a matrix full of zeros. ⁠"huge" = 1 + max. distance⁠, which will give a matrix full of ones, ⁠"minimum" = minimum distance in matrix⁠.
silent	Silent-ish
useParallel	Should evaluation run using package parallel? This is will only be beneficial if the time series contains more than 10k data points (default = TRUE)
doEmbed	If FALSE, a distance matrix will be returned that is not embedded by emDim and emLag (Multidimensional RQA). If y1 and/or y2 are data frames, the columns will be used as the state space dimensions (default = TRUE)
noiseLevel	Noise level to construct the ⁠signal + noiseLevel *⁠ N(\mu=0,\sigma=1) (default = 0.75)
noiseType	Type
plotROC	Generates an ROC plot if type = "optimal"

Value

A dataframe listing settings used to search for the radius, the radius found given the settings and the recurrence rate produced by the radius (either 1 row or the entire iteration history)

See Also

Other Estimate Recurrence Parameters: est_emDim(), est_emLag(), est_parameters(), est_parameters_roc(), est_radius()

FredHasselman/casnet documentation built on April 20, 2024, 3:05 p.m.