Man pages for FredHutch/tgR
TGR Convenience Functions
| copyAnnotations | Copy annotations from another record in REDCap |
| dropWhen | Remove columns with specific trash |
| getDictionary | Retrieve an example data dictionary from the TGR REDCap... |
| getTGRid | Request next subsequent molecular id in the TGR |
| listS3Objects | Pull the list(s) of objects and tags in S3 |
| pipe | Pipe operator |
| prep_s3_copy_and_tag | (admin) Prep a data frame for s3_copy_and_tag() |
| s3_copy_and_tag | (admin) Copy and tag objects between S3 buckets |
| setCreds | Sets tgR environment variables |
| summarizeS3Objects | Pull a summary of objects in S3 |
| tgR | tgR: A convenience package for the Translational Genomics... |
| tgrAnnotate | Queries TGR REDCap for dataset annotations |
| tgrDefinedAnnotations | Pull Current TGR Annotation and Value definitions |
| tgrDefinitions | Pull Current TGR Annotation and Value definitions |
| undefinedAnnotations | (Admin) Finds undefined REDCap variables |
| unusedAnnotations | (Admin) Finds unused REDCap variables |
| validateDataFrame | Validate an existing data frame prior to upload |
| validateDataset | Validate patient, specimen or assay material level datasets |
| validateUpload | Validate a data frame for upload to TGR |
| validIdentifiers | Test if proposed identifiers have already been used in the... |
