dataConstruct: Construct data object
In GIS-SP-Group/RCA: RCA: Clustering Single Cell RNAseq Data using Reference Component Analysis
Description
Usage
Arguments
Value
Examples
Description
Construct a data object for the analysis
Usage
1
dataConstruct(input_data)
Arguments
input_data
A data frame of expression values (FPKM, TPM, UMI counts ...), with rows representing genes and columns representing cells. Note the current version of RCA only accepts gene names in the following format: "GenomeLocation_HGNCGeneName_EnsembleID", from which the "HGNCGeneName" is extracted for RCA analysis. For input data with only HGNC names, the users need to attach two strings to the HGNC names to make them into the "XXXX_HGNCGeneNames_ENSYYYY" format.
Value
The data object for the following RCA analysis.
Examples
1
2
input_data = read.csv("fpkm_data.csv",row.names=1);
data_obj = dataConstruct(input_data);
GIS-SP-Group/RCA documentation built on May 6, 2019, 5:30 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Construct a data object for the analysis
Usage
1 | dataConstruct(input_data)
|
Arguments
input_data |
A data frame of expression values (FPKM, TPM, UMI counts ...), with rows representing genes and columns representing cells. Note the current version of RCA only accepts gene names in the following format: "GenomeLocation_HGNCGeneName_EnsembleID", from which the "HGNCGeneName" is extracted for RCA analysis. For input data with only HGNC names, the users need to attach two strings to the HGNC names to make them into the "XXXX_HGNCGeneNames_ENSYYYY" format. |
Value
The data object for the following RCA analysis.
Examples
1 2 | input_data = read.csv("fpkm_data.csv",row.names=1);
data_obj = dataConstruct(input_data);
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.