Files in GabrielNakamura/Rrodotus
Tools for Historical Biogeography analysis
.RData
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
Herodotools.Rproj
ISSUES.Rmd
ISSUES.html
LICENSE
LICENSE.md
NAMESPACE
R/affiliation_evoreg.R
R/data_description.R
R/evoregions.R
R/function_ada.R
R/function_age_arrival.R
R/function_ancestral_state.R
R/function_dispersal_from.R
R/function_find_maxn_clust.R
R/function_getNodeRange_biogeobears.R
R/function_insitu_PD_PE_metrics.R
R/function_model_based_diversificationJetz.R
R/function_nodes_info_core.R
R/function_plot_ada.R
R/function_region_occ.R
R/function_spp_nodes.R
R/spp_association.R
R/tipranges_to_BioGeoBEARS.R
R/transition_rates_function.R
R/utils-pipe.R
README.Rmd
README.md
_pkgdown.yml
data/akodon_newick.rda
data/akodon_sites.rda
data/averaged_rates.rda
data/regions.rda
data/resDEC.rda
data/rodent_phylo.rda
data/toy_treeEx.rda
data/trait.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/Fig1_richmap_akodon.png
docs/articles/Fig2_evoregion_akodon.png
docs/articles/Fig3_afilliation_akodon.png
docs/articles/Fig4_age_akodon.png
docs/articles/Fig5_diversification_akodon.png
docs/articles/Fig5_map_dispersion_from_akodon.png
docs/articles/Fig6_map_PEdb.png
docs/articles/Intro_Herodotools_vignette.html
docs/articles/Intro_Herodotools_vignette_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Intro_Herodotools_vignette_files/figure-html/mapEvoregion-1.png
docs/articles/Intro_Herodotools_vignette_files/figure-html/richpattern-1.png
docs/articles/Intro_Herodotools_vignette_files/header-attrs-2.14.1/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/DivB_metrics.html
docs/reference/GridFilter.html
docs/reference/Rplot001.png
docs/reference/ada.html
docs/reference/affiliation_evoreg.html
docs/reference/age_arrival.html
docs/reference/ancestral_state.html
docs/reference/db_diversification.html
docs/reference/dispersal_from.html
docs/reference/div_based_metrics.html
docs/reference/evoregions.html
docs/reference/figures/logo_herodotools.png
docs/reference/find.max.nclust.html
docs/reference/find_max_nclust.html
docs/reference/get.node.range_BioGeoBEARS.html
docs/reference/get_node_range_BioGeoBEARS.html
docs/reference/index.html
docs/reference/nodes_info_core.html
docs/reference/pipe.html
docs/reference/plot_ada.html
docs/reference/spp_association_evoreg.html
docs/reference/spp_nodes.html
docs/reference/tip.based.trait.evo.html
docs/reference/tipranges_to_BioGeoBEARS.html
docs/reference/toy_treeEx.html
docs/sitemap.xml
inst/extdata/DEM_Elev.tif
inst/extdata/Lon-lat-Disparity.txt
inst/extdata/MamFuncDat.txt
inst/extdata/PresAbs_228sp_Neotropical_MainDataBase_Ordenado.txt
inst/extdata/ReadME.txt
inst/extdata/Sigmodontinae_285speciesTree.tre
inst/extdata/Table_Akodon_coords_pa.txt
inst/extdata/akodon.new
inst/extdata/biogeo.txt
inst/extdata/bird_orders.txt
inst/extdata/community.txt
inst/extdata/geo_area_akodon.data
inst/extdata/importing_ex_datasets.R
inst/extdata/node_biogeo.txt
inst/extdata/regions_results.RData
inst/extdata/resDEC_akodon.RData
inst/extdata/script/e_00_akonon_example.R
inst/extdata/script/e_01_run_DEC_model.R
inst/extdata/script/e_02_macroevol_diversity.R
inst/extdata/size_akodon.txt
inst/extdata/spp_biogeo.txt
inst/extdata/toy_tree.new
inst/extdata/transition_rate_res.RData
inst/extdata/tree_akodon.nexus
man/ada.Rd
man/akodon_newick.Rd
man/akodon_sites.Rd
man/averaged_rates.Rd
man/calc_affiliation_evoreg.Rd
man/calc_age_arrival.Rd
man/calc_ancestral_state.Rd
man/calc_dispersal_from.Rd
man/calc_evoregions.Rd
man/calc_insitu_diversification.Rd
man/calc_insitu_metrics.Rd
man/calc_spp_association_evoreg.Rd
man/calc_tip_based_trait_evo.Rd
man/figures/logo_herodotools.png
man/find_max_nclust.Rd
man/get_node_range_BioGeoBEARS.Rd
man/get_nodes_info_core.Rd
man/get_region_occ.Rd
man/get_spp_nodes.Rd
man/get_tipranges_to_BioGeoBEARS.Rd
man/pipe.Rd
man/plot_ada.Rd
man/regions.Rd
man/resDEC.Rd
man/rodent_phylo.Rd
man/std_name_evoregion.Rd
man/toy_treeEx.Rd
man/trait.Rd
tests/testthat.R
tests/testthat/test-evoregions.R
vignettes/Intro_Herodotools_vignette.Rmd
vignettes/Intro_Herodotools_vignette.html
vignettes/maps_historicalVar_Akodon.png
vignettes/regions_results.RData
