calc_ancestral_state: Ancestral State per Assemblage

In GabrielNakamura/Rrodotus: Tools for Historical Biogeography analysis

Ancestral State per Assemblage

Description

Ancestral State per Assemblage

Usage

calc_ancestral_state(tree, ancestral.area, prefix = "N")

Arguments

tree	A newick phylogenetic tree object
ancestral.area	One column data frame. Lines are nodes the column are the biomes/region of occurrence for each ancestors. Can be obtained by using (get_node_range_BioGeoBEARS)
prefix	A single character string to be used to name nodes

Value

A data frame with assemblages in lines and nodes in columns. Each cell contains the ancestral area/Ecoregion of occurrence for each node and its respective species.

Author(s)

Gabriel Nakamura [e-mail]

Examples

biogeo_toy <- data.frame(Ecoregion= c("A", "B", "C"))
ancestral_area_toy <- data.frame(state= c("ABC", "B", "C", "ABC"))
calc_ancestral_state(toy_treeEx, ancestral_area_toy)

GabrielNakamura/Rrodotus documentation built on Aug. 31, 2023, 2:13 p.m.