Man pages for GabrielNakamura/Rrodotus
Tools for Historical Biogeography analysis
| ada | Ancestral Diversity Analysis |
| akodon_newick | Phylogenetic tree in of Akodon genus |
| akodon_sites | Occurrence data for Akodon species |
| averaged_rates | Averaged rates of life mode for Sigmodontinae assemblages |
| calc_affiliation_evoreg | Affiliation of assemblages based on phylogenetic turnover |
| calc_age_arrival | Computes the arrival ages of each species in the assemblages |
| calc_ancestral_state | Ancestral State per Assemblage |
| calc_dispersal_from | Proportional contribution of an ancestral area to the species... |
| calc_evoregions | Defining biogeographic regions based on phylogenetic turnover |
| calc_insitu_diversification | Tip-based in-situ diversification metrics |
| calc_insitu_metrics | Diversification-based PD and PE |
| calc_spp_association_evoreg | Quantifying species association with evoregions |
| calc_tip_based_trait_evo | Tip-based metrics of trait evolution |
| find_max_nclust | Estimate the maximum number of groups in DAPC analysis |
| get_node_range_BioGeoBEARS | Get node ranges from BioGeoBEARS biome reconstruction model |
| get_nodes_info_core | Auxiliary function to compute information of node path and... |
| get_region_occ | Species occurrence in each evoregion |
| get_spp_nodes | Species and their respective ancestral nodes |
| get_tipranges_to_BioGeoBEARS | Generates lagrangePHYLIP file for using in BioGeoBEARS |
| pipe | Pipe operator |
| plot_ada | Plotting ancestral area character in space |
| regions | Output from 'evoregion' function with classification of 732... |
| resDEC | Output from BioGeoBEARS |
| rodent_phylo | Phylogenetic tree with 285 species |
| std_name_evoregion | Standardize the evoregion names after... |
| toy_treeEx | Hypothetical phylogenetic tree |
| trait | Trait on foraging strata for small rodent |
