Man pages for Gavin-Yinld/csmFinder
Find putative cell-subset specific methylation (pCSM) loci in single-cell methylomes or bulk methylomes
| bismark2segment | Extract 4-CpG segments information from bismark reporting... |
| csmFinder | Find cell-subset specific methylation loci in genome. |
| find_candidate | Find candidate segments for pCSM segments identification. |
| merge_segment | Merge adjacent 4-CpG segments into pCSM regions |
| Nonparametric_Bayesian_clustering | nonparametric_Bayesian_clustering to group sequencing reads |
| run.beta.mixture.model | beta mixure model to decect pCSM loci |
