Nonparametric_Bayesian_clustering: nonparametric_Bayesian_clustering to group sequencing reads

In Gavin-Yinld/csmFinder: Find putative cell-subset specific methylation (pCSM) loci in single-cell methylomes or bulk methylomes

Description

Grouping the sequencing reads into hyper- and hypo-methylated subsets, and identify the segments with significant methylation difference bwtween two subsets as pCSM loci.

Usage

Nonparametric_Bayesian_clustering(segment, delta = 0.5, tau = 0.5, nperm = 1000, thread = 1)

Arguments

segment	the candidate segments used for CSM identification
delta	scalar, threshold for choosing seed clusters, 0 < delta < 0.5
tau	scalar, separation parameter
nperm	number of random permutation to inference the pCSM segments
thread	number of threads used to identify pCSM segments

Examples

#Nonparametric_Bayesian_clustering(segment, delta = 0.5, tau = 0.5, nperm = 1000, thread = 1)

Gavin-Yinld/csmFinder documentation built on Sept. 16, 2019, 3:31 p.m.