Man pages for GeertsManon/rKOMICS
Minicircle Sequence Cluster (MSC) Analyses
| exData | Example dataset |
| matrices | Example cluster matrices |
| msc.depth | Check the read depth of assembled minicircles |
| msc.heatmap | Visualization of cluster matrices |
| msc.length | Length of minicircles |
| msc.matrix | Build cluster matrix |
| msc.pca | Prinicple Component Analysis based on MSC |
| msc.quality | Check the quality of the assembly |
| msc.richness | Minicircle Sequence Cluster richness |
| msc.seqs | Retrieve sequences |
| msc.similarity | Minicircle Sequence Cluster similarity |
| msc.subset | Specific MSC |
| msc.uc | Cluster Analyses |
| pipe | Pipe operator |
| preprocess | Filtering of minicircle sequences |
| read.uc | Read in uc files |
| rKOMICS | Minicircle Sequence Cluster (MSC) Analyses |
