file: [!] Read header lines of OOI Base32 file

In GegznaV/spHelper: Extension of Package `hyperSpec` and Various Convenience Functions

[!] Read header lines of OOI Base32 file

Description

Read header lines with non-spectroscopic information of OOI Base32 (version 2.0.0.5) file.

Usage

file

Arguments

file	The name of the file which header lines are to be read from.
dec	The character used in the file for decimal points. Default is a point (.).
n	Number of lines to be read. Default is 17.
last_headerline_text	The text, that indicates the last line of the header lines and the beggining of spectroscopic information. Default is ">>>>>Begin Spectral Data<<<<<".
text	Text of header as if it was read with function readLines. If text is provided, file is ignored.

Format

An object of class character of length 1.

Value

A list with 2 enties:

1. $dataA dataframe with information, that contains these variable names:
   

   1 Date
   2 Time
   3 Graph_Title
   4 User
   5 Spectrometer_Serial_number
   6 Spectrometer_Type
   7 ADC_Type
   8 Spectrometer_Channel
   9 software_info
   10 Integration_time
   11 Integration_time_Units
   12 Scans_averaged
   13 Boxcar_width
   14 Electric_dark_correction
   15 Time_Normalized
   16 Dual_beam_Reference
   17 Reference_Channel
   18 Temperature
   19 n_pixels_in_spectrum

2. $last_header_line The number of the last header line

Author(s)

Vilmantas Gegzna

See Also

Other spHelper functions for spectroscopy and hyperSpec: IQR_outliers(), binning(), gapDer(), hy2mat(), hyAdd_Label_wl(), hyAdd_Labels_PAP_PD_2014(), hyAdd_Labels_TD2009(), hyAdd(), hyDrop_NA(), hyGet_palette(), hyRm_palette(), mad_outliers(), mean_Nsd(), median_Nmad(), plot_hyPalette(), prepare_PAP_RK_2014__MATLAB_failui(), read.OOIBase32(), read.OceanView.header(), read.OceanView(), read.sp.csv2(), read3csv2hy(), replace_spc(), sd_outliers(), spStat(), sp_class_perform()

Other functions to read spectroscopic data: read.OOIBase32(), read.OceanView.header(), read.OceanView()

Examples

## Not run: 

 read.OOIBase32.header("MySpectra.Scope")
 read.OOIBase32.header("MySpectra.Scope")$data


## End(Not run)


## OOIBase32 Version 2.0.0.5 Data File:

#
#      OOIBase32 Version 2.0.0.5 Data File
#      ++++++++++++++++++++++++++++++++++++
#      Date: 03-04-2014, 15:00:04
#      User: Valued Ocean Optics Customer
#      Spectrometer Serial Number:
#      Spectrometer Channel: Master
#      Integration Time (msec): 5000
#      Spectra Averaged: 1
#      Boxcar Smoothing: 0
#      Correct for Electrical Dark: Enabled
#      Time Normalized: Disabled
#      Dual-beam Reference: Disabled
#      Reference Channel: Master
#      Temperature: Not acquired
#      Spectrometer Type: S2000
#      ADC Type: USB2000
#      Number of Pixels in File: 2048
#      Graph Title:
#      >>>>>Begin Spectral Data<<<<<

GegznaV/spHelper documentation built on April 16, 2023, 1:42 p.m.