NEWS.md

In GenEpi-GenPhySE/epistack: Heatmaps of Stack Profiles from Epigenetic Signals

epistack 1.7.1 (2022-07-21)

• New parameters in plotEpistack(): rel_widths and rel_heights, to adjust the relative widths and heights of the panels.
• In plotEpistack(), the boxMetric panel is now a bit higher.
• plotMetric() now have a ylab parameter, exposed in plotEpistack()

epistack 1.7.1 (2022-07-21)

• left-most panel in plotEpistack() is a bit wider
• fixed a code typo in vignette

epistack 1.5.4 (2022-04-05)

• CITATION added

epistack 1.5.3 (2022-04-04)

• plotAverageProfile's reversed_z_order is now exposed in plotEpistack
• 95% confidence interval is now the default in plotEpistack
• plotEpistck's legends are now also displayed as y-axis title in plotAverageProfile plots

epistack 1.5.2 (2022-04-03)

• changing the default bin colors
• bin_palette in plotEpistack(), plotBoxMetric(), and plotAverageProfile(), and palette in plotBinning() can now be vectors of colors instead of palette functions
• tints now accept palette functions and list of palette functions, in addition to colors.

epistack 1.5.1 (2022-03-30)

• vignette improvements (thanks to Isabelle Stevant)
• documentation improvments: multiple zlims are possible if provided as a list

epistack 1.1.3 (2021-12-08)

• changes in epistack.R Rscript CLI
• plotAverageProfile() now support 95% confidence interval (parameter error_type).

epistack 1.1.2 (2021-11-27)

• addition of an Rscript script in inst/
• new main parameter in plotEpistack()
• plotBinning() Bins label in horizontal orientation

epistack 1.1.1 (2021-11-17)

• epistack now mostly use RangesSummarizedExperiment objects instead of GRanges objects (but backward compatibility with GRanges is ensured).

epistack 0.99.3 (2021-10-19)

• plotAverageProfile() now has the parameter error_type, value: sd or sem, default: sd (was previously sem)

epistack 0.99.2 (2021-10-15)

• sessionInfo() at the end of the vignette
• edits in NEWS, README and the vignette

epistack 0.99.1 (2021-10-01)

• Initial Bioconductor submission

GenEpi-GenPhySE/epistack documentation built on July 27, 2023, 1:09 a.m.