R/stackepi.R

In GenEpi-GenPhySE/epistack: Heatmaps of Stack Profiles from Epigenetic Signals

#' epistack example and test dataset
#'
#' @description DNA methylation profiles (from MBD-seq data) arround transcription
#' start sites of the 693 chr18 genes annotated on the pig genome
#' (Sscrofa11.1), as well as gene expression levels in
#' Transcript Per Million (TPM) measured by RNA-seq in the same
#' duodenum sample.
#'
#' @format A \code{RangedSummarizedExperiment} of the 693 rows,
#' 2 rows metadata columns, and one assay containing the DNA methylation
#' signal.
#'
#' @importFrom SummarizedExperiment SummarizedExperiment
#'
#' @usage data("stackepi")
#'
#' @source This dataset was generated from ENSEMBL annotation data
#' and data generated by our lab (publicly available soon).
#'
"stackepi"