getAAFrequencies: Calculate amino acid frequencies
In Genentech/MiDAS: R package for immunogenomics data handling and association analysis
View source: R/transformationFunctions.R
getAAFrequencies R Documentation
Calculate amino acid frequencies
Description
getAAFrequencies calculates amino acid frequencies in amino acid
data frame.
Usage
getAAFrequencies(aa_variation)
Arguments
aa_variation
Amino acid variation data frame as returned by
hlaToAAVariation.
Details
Both gene copies are taken into consideration for frequencies calculation,
frequency = n / (2 * j) where n is the number of amino acid
occurrences and j is the number of samples in aa_variation.
Value
Data frame with each row holding specific amino acid position, it's
count and frequency.
Examples
aa_variation <- hlaToAAVariation(MiDAS_tut_HLA)
getAAFrequencies(aa_variation)
Genentech/MiDAS documentation built on Feb. 5, 2024, 11:52 a.m.
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View source: R/transformationFunctions.R
| getAAFrequencies | R Documentation |
Calculate amino acid frequencies
Description
getAAFrequencies calculates amino acid frequencies in amino acid
data frame.
Usage
getAAFrequencies(aa_variation)
Arguments
aa_variation |
Amino acid variation data frame as returned by hlaToAAVariation. |
Details
Both gene copies are taken into consideration for frequencies calculation,
frequency = n / (2 * j) where n is the number of amino acid
occurrences and j is the number of samples in aa_variation.
Value
Data frame with each row holding specific amino acid position, it's count and frequency.
Examples
aa_variation <- hlaToAAVariation(MiDAS_tut_HLA)
getAAFrequencies(aa_variation)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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