hlaAlignmentGrantham: Helper function returning alignment for Grantham distance...
In Genentech/MiDAS: R package for immunogenomics data handling and association analysis
hlaAlignmentGrantham R Documentation
Helper function returning alignment for Grantham distance calculations
Description
Helper function returning alignment for Grantham distance calculations
Usage
hlaAlignmentGrantham(gene, aa_sel = 2:182)
Arguments
gene
Character vector specifying HLA gene.
aa_sel
Numeric vector specifying amino acids that should be extracted.
Value
HLA alignment processed for grantham distance calculation. Processing
includes extracting specific amino acids, masking indels, gaps and stop
codons.
Genentech/MiDAS documentation built on Feb. 5, 2024, 11:52 a.m.
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| hlaAlignmentGrantham | R Documentation |
Helper function returning alignment for Grantham distance calculations
Description
Helper function returning alignment for Grantham distance calculations
Usage
hlaAlignmentGrantham(gene, aa_sel = 2:182)
Arguments
gene |
Character vector specifying HLA gene. |
aa_sel |
Numeric vector specifying amino acids that should be extracted. |
Value
HLA alignment processed for grantham distance calculation. Processing includes extracting specific amino acids, masking indels, gaps and stop codons.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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