measure_taxa_and_mbness: Measure number of taxa and mb-ness for each parameter setting

In Giappo/mbd.SimTrees: Use mbd to estimate number of taxa and strength of the mb signal in simulated trees

Description

Measure number of taxa and mb-ness for each parameter setting

Usage

measure_taxa_and_mbness(lambdas = c(0.2), mus = c(0, 0.1), nus = c(0,
  0.5, 1, 1.5), qs = c(0.1, 0.15, 0.2), cond = 1, crown_age = 8,
  n_replicates = 10000, saveit = TRUE)

Arguments

lambdas	per-lineage speciation rate. See mbd_sim
mus	per-species extinction rate. See mbd_sim
nus	the rate at which a multiple-birth specation is triggered.
qs	per-species speciation probability in case of occurrance of
cond	Conditioning
crown_age	The crown age of the tree
n_replicates	number of replicates
saveit	do you want to save it?

Value

a dataframe with parameter settings, a sample of number of taxa and a sample of mb-ness (in percentage and absolute).

Author(s)

Giovanni Laudanno

Giappo/mbd.SimTrees documentation built on Jan. 23, 2020, 3:40 a.m.