Files in Giappo/mbd
Multiple Birth Death Diversification

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/default_params_doc.R R/mbd_checks.R R/mbd_condprob.R R/mbd_integrate.R R/mbd_loglik.R R/mbd_loglik_utils.R R/mbd_main.R R/mbd_main_utils.R R/mbd_ml.R R/mbd_pmb.R R/mbd_sim.R R/mbd_sim_utils.R R/mbd_utils.R R/nee_functions.R README.md

account_name

appveyor.yml

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inst/extdata/cond_probs/pars=1.04,0.254,1.47,0.13-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.04,0.909,2.09,0.0906-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.04,0.909,2.09,0.0906-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.08,0.266,1.31,0.082-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.08,0.266,1.31,0.082-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.13,0.319,1.62,0.252-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.13,0.319,1.62,0.252-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.19,0.3,2.12,0.115-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.19,0.3,2.12,0.115-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.24,0.883,2.81,0.0775-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.24,0.883,2.81,0.0775-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.32,1.02,1.03,0.235-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.32,1.02,1.03,0.235-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.38,1.29,1.04,0.341-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.38,1.29,1.04,0.341-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.48,0.59,0.601,0.0744-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.48,0.59,0.601,0.0744-age=5-taxa_plot.png

inst/extdata/cond_probs/pars=1.5,0.15,1.35,0.09-age=5-pc_sim.Rdata

inst/extdata/cond_probs/pars=1.5,0.15,1.35,0.09-age=5-taxa_plot.png

inst/extdata/nee_vs_p-params_grid.RData

inst/extdata/nee_vs_p-params_grid.png

inst/extdata/pc_vs_lx-hi_params.RData

inst/extdata/pc_vs_lx-hi_params.png

inst/extdata/pc_vs_lx-mid_params.RData

inst/extdata/pc_vs_lx-mid_params.png

inst/extdata/pc_vs_lx-razzo_params.RData

inst/extdata/pc_vs_lx-razzo_params.png

libs/hyperA_0.1.0.tar.gz

libs/hyperA_0.1.0.zip

man/approximate_brts.Rd man/brts2time_intervals_and_births.Rd man/calculate_condprob.Rd man/cat2.Rd man/check_brts.Rd man/check_cond.Rd man/check_condprob_eq.Rd man/check_lx.Rd man/check_n_0.Rd man/check_pars.Rd man/check_pc.Rd man/check_q_vector.Rd man/check_seed.Rd man/check_sum_probs.Rd man/condprob.Rd man/condprob_dp.Rd man/condprob_dp_absorb.Rd man/condprob_dp_absorb_lambda.Rd man/condprob_dp_absorb_mu.Rd man/condprob_dp_absorb_rhs.Rd man/condprob_dp_lambda.Rd man/condprob_dp_mu.Rd man/condprob_dp_nu.Rd man/condprob_dp_rhs.Rd man/condprob_dq.Rd man/condprob_dq_absorb.Rd man/condprob_dq_absorb_lambda.Rd man/condprob_dq_absorb_mu.Rd man/condprob_dq_absorb_rhs.Rd man/condprob_dq_lambda.Rd man/condprob_dq_mu.Rd man/condprob_dq_nu.Rd man/condprob_dq_rhs.Rd man/condprob_nee.Rd man/condprob_nu_matrix_p.Rd man/condprob_nu_matrix_q.Rd man/condprob_p.Rd man/condprob_p_n1_n2.Rd man/condprob_parmsvec.Rd man/condprob_q.Rd man/condprob_q_m1_m2.Rd man/condprob_sim.Rd man/count_n_mb_events.Rd man/count_percentage_mb_events.Rd man/create_a.Rd man/create_a_slow.Rd man/create_b.Rd man/create_data_file_name.Rd man/create_empty_phylo.Rd man/create_n.Rd man/create_results_file_name.Rd man/create_singleton_phylo.Rd man/cut_loglik_from_name.Rd man/default_lx.Rd man/default_params_doc.Rd man/deliver_loglik.Rd man/estimate_n_taxa.Rd man/evaluate_sim.Rd man/file_path.Rd man/get_function_names.Rd man/get_info_l_matrix.Rd man/get_model_names.Rd man/get_nee_pars.Rd man/get_param_names.Rd man/get_pars_filename.Rd man/get_pkg_name.Rd man/hyper_matrix0.Rd man/hyper_matrix1.Rd man/hyper_matrix2.Rd man/initialize_l_matrix.Rd man/initialize_q_t.Rd man/is_pmb.Rd man/main_save_files.Rd man/max_lx.Rd man/max_lx_condprob.Rd man/mbd_condprob_eqs.Rd man/mbd_conds.Rd man/mbd_experiment_logliks.Rd man/mbd_experiment_pars.Rd man/mbd_integrate.Rd man/mbd_loglik.Rd man/mbd_loglik_rhs.Rd man/mbd_logliks_function.Rd man/mbd_main.Rd man/mbd_ml.Rd man/mbd_ode_fortran.Rd man/mbd_sim.Rd man/mbd_solve.Rd man/mbd_solve_methode.Rd man/min_lx_condprob.Rd man/my_try_catch.Rd man/nee_mean_nt.Rd man/nee_stdev_nt.Rd man/one_minus_pt.Rd man/one_minus_ut.Rd man/p_t.Rd man/pars_transform_back.Rd man/pars_transform_forward.Rd man/pmb_loglik.Rd man/pn.Rd man/print_info.Rd man/read_results.Rd man/to_string2.Rd man/ut.Rd

mbd.Rproj

pics/AppVeyor.png

pics/Codecov.png

pics/TravisCI.png

scripts/pcp_vs_pcq_vs_pvsim.R scripts/pcs_vs_lx.R

src/Makevars

src/R_init_mbd.c

src/R_init_mbd.o

src/mbd.dll

src/mbd_dimmod.mod

src/mbd_loglik_rhs_FORTRAN.f95

src/mbd_loglik_rhs_FORTRAN.o

vignettes/mbd_demo.html

Giappo/mbd documentation built on March 3, 2020, 3:36 a.m.

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