pmb_loglik: Calculate the log-likelihood for a Pure Multiple Birth model

In Giappo/mbd: Multiple Birth Death Diversification

Description

Calculate the log-likelihood for a Pure Multiple Birth model

Usage

pmb_loglik(pars, brts, n_0 = 2)

Arguments

pars	vector of parameters: pars[1] is lambda, the sympatric speciation rate; pars[2] is mu, the extinction rate; pars[3] is nu, the multiple allopatric speciation trigger rate; pars[4] is q, the single-lineage speciation probability;
brts	A set of branching times of a phylogeny.
n_0	the number of lineages at time equals zero.

Author(s)

Giovanni Laudanno

See Also

use mbd_loglik to calculate the log-likelihood for a Multiple Birth Death model.

Giappo/mbd documentation built on March 3, 2020, 3:36 a.m.