View source: R/MatrixFeatures.R
addPeakMatrix | R Documentation |
This function, for each sample, will independently compute counts for each peak per cell in the provided ArchRProject using the "PeakMatrix".
addPeakMatrix(
ArchRProj = NULL,
ceiling = 4,
binarize = FALSE,
verbose = TRUE,
threads = getArchRThreads(),
parallelParam = NULL,
force = TRUE,
logFile = createLogFile("addPeakMatrix")
)
ArchRProj |
An |
ceiling |
The maximum counts per feature allowed. This is used to prevent large biases in peak counts. |
binarize |
A boolean value indicating whether the peak matrix should be binarized prior to storage. This can be useful for downstream analyses when working with insertion counts. |
verbose |
A boolean value that determines whether standard output includes verbose sections. |
threads |
The number of threads to be used for parallel computing. |
parallelParam |
A list of parameters to be passed for biocparallel/batchtools parallel computing. |
force |
A boolean value indicating whether to force the "PeakMatrix" to be overwritten if it already exist in the given |
logFile |
The path to a file to be used for logging ArchR output. |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.