get_m1_nuc: get_m1_nuc
In GreenleafLab/NucleoATACR: Work with outputs of NucleoATAC python package in R
Description
Usage
Arguments
Value
See Also
Description
get_m1_nuc
Usage
1
2
get_m1_nuc(nucs.ranges, sites, annotate_sites = F, max_dist = 350,
shift = 0)
Arguments
nucs.ranges
GRanges object with nucleosome positions
sites
GRanges object with sites to get -1 nucs from.
annotate_sites
what to return– sites with -1 nuc annotation or +1 nucs?
max_dist
what is maximum distance to consider
shift
integer shift to apply to sites before finding -1
Value
returns either subset of nucs that are -1 or annotated version of sites
See Also
GreenleafLab/NucleoATACR documentation built on May 6, 2019, 6:31 p.m.
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Description Usage Arguments Value See Also
Description
get_m1_nuc
Usage
1 2 | get_m1_nuc(nucs.ranges, sites, annotate_sites = F, max_dist = 350,
shift = 0)
|
Arguments
nucs.ranges |
GRanges object with nucleosome positions |
sites |
GRanges object with sites to get -1 nucs from. |
annotate_sites |
what to return– sites with -1 nuc annotation or +1 nucs? |
max_dist |
what is maximum distance to consider |
shift |
integer shift to apply to sites before finding -1 |
Value
returns either subset of nucs that are -1 or annotated version of sites
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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