plot_report_repertoire: Plots main repertoire features (length distribution,amino...
In GreiffLab/immuneSIM: Tunable Simulation of B- And T-Cell Receptor Repertoires
View source: R/plot_report_repertoire.R
plot_report_repertoire R Documentation
Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)
Description
Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)
Usage
plot_report_repertoire(repertoire, output_dir = "", verbose = TRUE)
Arguments
repertoire
An annotated AIRR-compliant immuneSIM repertoire.
(http://docs.airr-community.org/en/latest/)
output_dir
String containing full path of desired output folder. If empty figures will be output in tempdir().
verbose
Determines whether messages on plot locations are output to user. (Default: TRUE)
Value
TRUE (plots saved as pdfs into subfolder 'figures')
Examples
repertoire <- list_example_repertoires[["example_repertoire_A"]]
plot_report_repertoire(repertoire,output_dir="")
GreiffLab/immuneSIM documentation built on Dec. 2, 2023, 1:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/plot_report_repertoire.R
| plot_report_repertoire | R Documentation |
Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)
Description
Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)
Usage
plot_report_repertoire(repertoire, output_dir = "", verbose = TRUE)
Arguments
repertoire |
An annotated AIRR-compliant immuneSIM repertoire. (http://docs.airr-community.org/en/latest/) |
output_dir |
String containing full path of desired output folder. If empty figures will be output in tempdir(). |
verbose |
Determines whether messages on plot locations are output to user. (Default: TRUE) |
Value
TRUE (plots saved as pdfs into subfolder 'figures')
Examples
repertoire <- list_example_repertoires[["example_repertoire_A"]]
plot_report_repertoire(repertoire,output_dir="")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.