Man pages for Grelot/rgeogendiv
Geographic Genetic Diversity
| align_sequence | function to align sequences with DECIPHER |
| cluster_classification_bold_res | Cluster classification |
| color_GD | Colors of numeric value |
| date_bold_res | run date of bold specimen |
| extract_date_from_str | extract date from a string |
| fishbase_names_check | Check for alternate versions of a scientific name and return... |
| fishbase_verify_bold_species | Verify against FishBase the species names of BOLD specimen |
| grid_spatialpoints | Build a map grid spatialpoints |
| grid_spatialpolygons | Build a map grid spatialpolygons |
| hello_world | Say Hello |
| legend_limit_GD | labels of Limits |
| legend_qt_GD | labels of Intervals |
| marker_bold_res | Return a data.frame of markers and count from BOLD dataset |
| nuc_diversity_alignment | calculate nucleotide diversity |
| nucleotide_diversity_grid | nucleotide diversity by site on the worldmap grid |
| nucleotide_diversity_sites | nucleotide diversity by site |
| nucleotide_diversity_species | nucleotide diversity by species applied to all sites |
| number_sequences_by_points | Number of sequences in a site |
| pipe | Pipe operator |
| plot_grid | Print worldmap of mean species genetic diversity |
| preliminary_analysis | Preliminary Analysis |
| prepare_bold_res | Prepare raw BOLD specimen and DNA sequences dataset |
| spatialpoints_bold_df | Transform curated BOLD data.frame into spatialpoints object... |
| species_nucleotide_diversity_site | Nucleotide diversity by species |
| specimen_intersect_site | specimen spatial points within spatial polygons site of grid |
| tag_GD | Labels of numeric value |
