fishbase_verify_bold_species: Verify against FishBase the species names of BOLD specimen
In Grelot/rgeogendiv: Geographic Genetic Diversity
Description
Usage
Arguments
Value
View source: R/fishbase_verify_bold_species.R
Description
Add a column named 'fishbase_species_name' to a curated BOLD specimen dataframe.
This column gives the species name used to identify the specimen in FishBase
If the specimen BOLD species name is not found in FishBase, then a NA value is given.
Usage
1
fishbase_verify_bold_species(datGeoSpecMarkSeqClean)
Arguments
datGeoSpecMarkSeqClean
A curated dataframe generated by 'prepare_bold_res' function from rgeogendiv package
with 80 columns including:
'species_name': this column is a list of string object. The only one necessary to validate species name on FishBase.
Value
A data.frame with a supplementary column 'fishbase_species_name'.
This column is a list of strings.
It gives synonyms of species names used by FishBase to describe BOLD specimen.
If the specimen BOLD species name is not found in FishBase, then a NA value is given.
Grelot/rgeogendiv documentation built on Dec. 22, 2020, 5:51 a.m.
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Description Usage Arguments Value
View source: R/fishbase_verify_bold_species.R
Description
Add a column named 'fishbase_species_name' to a curated BOLD specimen dataframe. This column gives the species name used to identify the specimen in FishBase If the specimen BOLD species name is not found in FishBase, then a NA value is given.
Usage
1 | fishbase_verify_bold_species(datGeoSpecMarkSeqClean)
|
Arguments
datGeoSpecMarkSeqClean |
A curated dataframe generated by 'prepare_bold_res' function from rgeogendiv package with 80 columns including: 'species_name': this column is a list of string object. The only one necessary to validate species name on FishBase. |
Value
A data.frame with a supplementary column 'fishbase_species_name'. This column is a list of strings. It gives synonyms of species names used by FishBase to describe BOLD specimen. If the specimen BOLD species name is not found in FishBase, then a NA value is given.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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