README.md

In GrindeLab/STEAMcpp: Significance Threshold Estimation for Admixture Mapping using Rcpp

STEAMcpp

Significance Threshold Estimation for Admixture Mapping using Rcpp (R Package)

This is a working version of STEAM (Significance Threshold Estimation for Admixture Mapping) with core functions implemented with Rcpp.

To use the code, download the tar.gz file and load into R or run the following in R:

## install.packages("devtools")
library(devtools)
install_github('GrindeLab/STEAMcpp', build_vignettes = TRUE)

There could potentially be red warning messages in the console during the installation process. This link https://stackoverflow.com/questions/65987522/how-to-remove-the-warning-rcpp-dataframe-h13618-warning-unused-variable-dat offers tremendous help. The warning messages should disappear after the following code is run in the console:

install.packages("Rcpp", repos="https://rcppcore.github.io/drat")

We are in the process of writing vignettes and publishing it. For a description of the functionality, check the README file of the STEAM package: https://github.com/kegrinde/STEAM.

GrindeLab/STEAMcpp documentation built on March 17, 2021, 8:03 p.m.