exp_corr: Expected Local Ancestry Correlation
In GrindeLab/STEAMcpp: Significance Threshold Estimation for Admixture Mapping using Rcpp
Description
Usage
Arguments
Value
Examples
Description
Calculate expected correlation in local ancestry components at
a pair of loci, based on Lemma 1 in Grinde et al. (TBD).
Usage
1
exp_corr(theta, g, props, k1, k2)
Arguments
theta
recombination fraction between pair of loci
g
generations since admixture
props
data frame (n x K) of admixture proportions
k1, k2
component indices
Value
A single number indicating the correlation of local ancestry.
Examples
1
2
exp_corr(theta = 0.2, g = 6, props = example_props, k1 = 1, k2 = 1)
exp_corr(theta = 0.2, g = 6, props = example_props, k1 = 1, k2 = 2)
GrindeLab/STEAMcpp documentation built on March 17, 2021, 8:03 p.m.
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Description Usage Arguments Value Examples
Description
Calculate expected correlation in local ancestry components at a pair of loci, based on Lemma 1 in Grinde et al. (TBD).
Usage
1 | exp_corr(theta, g, props, k1, k2)
|
Arguments
theta |
recombination fraction between pair of loci |
g |
generations since admixture |
props |
data frame (n x K) of admixture proportions |
k1, k2 |
component indices |
Value
A single number indicating the correlation of local ancestry.
Examples
1 2 | exp_corr(theta = 0.2, g = 6, props = example_props, k1 = 1, k2 = 1)
exp_corr(theta = 0.2, g = 6, props = example_props, k1 = 1, k2 = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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