Files in GuangchuangYu/ggtree
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

.Rbuildignore
.github/issue_template.md
.gitignore
.gitmodules
.svnignore
.travis.yml
CONTRIBUTING.md CONTRIBUTORS.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
NEWS.md R/AllGenerics.R R/Date.R R/MRCA.R R/as.polytomy.R R/clade-functions.R R/defunct.R R/experimental_function.R R/facet_plot.R R/format.R R/fortify-utilities.R R/geom_balance.R R/geom_cladelabel.R R/geom_cladelabel2.R R/geom_hilight.R R/geom_hilight_encircle.R R/geom_label.R R/geom_nodelab.R R/geom_point.R R/geom_range.R R/geom_segment.R R/geom_strip.R R/geom_taxalink.R R/geom_text.R R/geom_tiplab.R R/geom_tree.R R/geom_treescale.R R/ggtree-package.R R/ggtree.R R/gheatmap.R R/inset.R R/layout.R R/method-fortify.R R/method-groupClade.R R/method-groupOTU.R R/method-gzoom.R R/method-identify.R R/method-reroot.R R/method-scale-color.R R/msaplot.R R/multiplot.R R/operator.R R/reexports.R R/rescale_tree.R R/theme.R R/tree-utilities.R R/treeio.R R/utilities.R R/xlim.R R/zzz.R README.Rmd README.md TODO.md
appveyor.yml
docs/.gitkeep
docs/categories/index.xml
docs/documentation/index.html
docs/documentation/index.rmd
docs/documentation/index.xml
docs/faq/index.html
docs/faq/index.rmd
docs/faq/index.xml
docs/featured-articles/index.html
docs/featured-articles/index.rmd
docs/featured-articles/index.xml
docs/fonts/icon.eot
docs/fonts/icon.svg
docs/fonts/icon.ttf
docs/fonts/icon.woff
docs/gallery/index.html
docs/gallery/index.rmd
docs/gallery/index.xml
docs/images/citation.png
docs/images/colors.png
docs/images/dlstats.png
docs/images/favicon.ico
docs/images/gc.png
docs/images/logo.png
docs/images/screen.png
docs/index.html
docs/index.rmd
docs/index.xml
docs/javascripts/application.js
docs/javascripts/modernizr.js
docs/rmarkdown-libs/font-awesome/HELP-US-OUT.txt
docs/rmarkdown-libs/font-awesome/css/font-awesome.css
docs/rmarkdown-libs/font-awesome/css/font-awesome.min.css
docs/rmarkdown-libs/font-awesome/fonts/FontAwesome.otf
docs/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.eot
docs/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.svg
docs/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.ttf
docs/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.woff
docs/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.woff2
docs/rmarkdown-libs/font-awesome/less/animated.less
docs/rmarkdown-libs/font-awesome/less/bordered-pulled.less
docs/rmarkdown-libs/font-awesome/less/core.less
docs/rmarkdown-libs/font-awesome/less/fixed-width.less
docs/rmarkdown-libs/font-awesome/less/font-awesome.less
docs/rmarkdown-libs/font-awesome/less/icons.less
docs/rmarkdown-libs/font-awesome/less/larger.less
docs/rmarkdown-libs/font-awesome/less/list.less
docs/rmarkdown-libs/font-awesome/less/mixins.less
docs/rmarkdown-libs/font-awesome/less/path.less
docs/rmarkdown-libs/font-awesome/less/rotated-flipped.less
docs/rmarkdown-libs/font-awesome/less/screen-reader.less
docs/rmarkdown-libs/font-awesome/less/stacked.less
docs/rmarkdown-libs/font-awesome/less/variables.less
docs/rmarkdown-libs/font-awesome/scss/_animated.scss
docs/rmarkdown-libs/font-awesome/scss/_bordered-pulled.scss
docs/rmarkdown-libs/font-awesome/scss/_core.scss
docs/rmarkdown-libs/font-awesome/scss/_fixed-width.scss
docs/rmarkdown-libs/font-awesome/scss/_icons.scss
docs/rmarkdown-libs/font-awesome/scss/_larger.scss
docs/rmarkdown-libs/font-awesome/scss/_list.scss
docs/rmarkdown-libs/font-awesome/scss/_mixins.scss
docs/rmarkdown-libs/font-awesome/scss/_path.scss
docs/rmarkdown-libs/font-awesome/scss/_rotated-flipped.scss
docs/rmarkdown-libs/font-awesome/scss/_screen-reader.scss
docs/rmarkdown-libs/font-awesome/scss/_stacked.scss
docs/rmarkdown-libs/font-awesome/scss/_variables.scss
docs/rmarkdown-libs/font-awesome/scss/font-awesome.scss
docs/sitemap.xml
docs/stylesheets/application.css
docs/stylesheets/highlight/highlight.css
docs/stylesheets/palettes.css
docs/stylesheets/temporary.css
docs/tags/index.xml
docs/tweets/index.html
docs/tweets/index.rmd
docs/tweets/index.xml
docs/vignettes/ggtree-ggimage.html
docs/vignettes/ggtree-inset.html
inst/CITATION
inst/as.phylo.igraph.R
inst/examples/FluA_H3_AA.fas
inst/examples/Genotype.txt
inst/examples/MCC_FluA_H3.tree
inst/examples/NAG_inHA1.txt
inst/examples/mlc
inst/examples/rst
inst/examples/sites.txt
inst/ggtreeUtilities.Rmd inst/vignette.Rmd man/Date2decimal.Rd man/GetSubtree.df.Rd man/GetSubtreeUnrooted.Rd man/MRCA.Rd man/add-TREEDATA.Rd man/add_TREEINFO.Rd man/add_colorbar.Rd man/annotation_image.Rd man/applyLayoutDaylight.Rd man/as.polytomy.Rd man/collapse.Rd man/decimal2Date.Rd man/dotFun.Rd man/expand.Rd man/facet_plot.Rd man/flip.Rd man/geom_aline.Rd man/geom_balance.Rd man/geom_cladelabel.Rd man/geom_cladelabel2.Rd man/geom_hilight.Rd man/geom_hilight_encircle.Rd man/geom_label2.Rd man/geom_motif.Rd man/geom_nodelab.Rd man/geom_nodepoint.Rd man/geom_point2.Rd man/geom_range.Rd man/geom_rootpoint.Rd man/geom_segment2.Rd man/geom_strip.Rd man/geom_taxalink.Rd man/geom_text2.Rd man/geom_tiplab.Rd man/geom_tiplab2.Rd man/geom_tippoint.Rd man/geom_tree.Rd man/geom_tree2.Rd man/geom_treescale.Rd man/get.offspring.tip.Rd man/get.path.Rd man/getChild.df.Rd man/getNodeAngle.df.Rd man/getNodesBreadthFirst.df.Rd man/getParent.df.Rd man/getSubtree.Rd man/getSubtreeUnrooted.df.Rd man/getTreeArcAngles.Rd man/get_balance_position.Rd man/get_clade_position.Rd man/get_heatmap_column_position.Rd man/get_taxa_name.Rd man/ggtree-ggproto.Rd man/ggtree.Rd man/gheatmap.Rd man/gzoom-methods.Rd man/gzoom.phylo.Rd man/identify.Rd man/inset.Rd man/layoutDaylight.Rd man/layoutEqualAngle.Rd man/msaplot.Rd man/multiplot.Rd man/nodebar.Rd man/nodeid.Rd man/nodepie.Rd man/open_tree.Rd man/phylopic.Rd man/pipe.Rd man/range_format.Rd man/reexports.Rd man/reroot-methods.Rd man/rescale_tree.Rd man/revts.Rd man/rotate.Rd man/rotateTreePoints.df.Rd man/rotate_tree.Rd man/scaleClade.Rd man/scale_color-methods.Rd man/scale_x_ggtree.Rd man/set_hilight_legend.Rd man/stat_balance.Rd man/stat_hilight.Rd man/subview.Rd man/theme_inset.Rd man/theme_tree.Rd man/theme_tree2.Rd man/update-TREE.Rd man/viewClade.Rd man/xlim_expand.Rd man/xlim_tree.Rd
site_src/config.toml
site_src/content/documentation/index.html
site_src/content/documentation/index.rmd
site_src/content/faq/index.html
site_src/content/faq/index.rmd
site_src/content/featured-articles/index.html
site_src/content/featured-articles/index.rmd
site_src/content/gallery/index.html
site_src/content/gallery/index.rmd
site_src/content/index.html
site_src/content/index.rmd
site_src/content/tweets/index.html
site_src/content/tweets/index.rmd site_src/index.Rmd
site_src/static/.gitkeep
site_src/static/rmarkdown-libs/font-awesome/HELP-US-OUT.txt
site_src/static/rmarkdown-libs/font-awesome/css/font-awesome.css
site_src/static/rmarkdown-libs/font-awesome/css/font-awesome.min.css
site_src/static/rmarkdown-libs/font-awesome/fonts/FontAwesome.otf
site_src/static/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.eot
site_src/static/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.svg
site_src/static/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.ttf
site_src/static/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.woff
site_src/static/rmarkdown-libs/font-awesome/fonts/fontawesome-webfont.woff2
site_src/static/rmarkdown-libs/font-awesome/less/animated.less
site_src/static/rmarkdown-libs/font-awesome/less/bordered-pulled.less
site_src/static/rmarkdown-libs/font-awesome/less/core.less
site_src/static/rmarkdown-libs/font-awesome/less/fixed-width.less
site_src/static/rmarkdown-libs/font-awesome/less/font-awesome.less
site_src/static/rmarkdown-libs/font-awesome/less/icons.less
site_src/static/rmarkdown-libs/font-awesome/less/larger.less
site_src/static/rmarkdown-libs/font-awesome/less/list.less
site_src/static/rmarkdown-libs/font-awesome/less/mixins.less
site_src/static/rmarkdown-libs/font-awesome/less/path.less
site_src/static/rmarkdown-libs/font-awesome/less/rotated-flipped.less
site_src/static/rmarkdown-libs/font-awesome/less/screen-reader.less
site_src/static/rmarkdown-libs/font-awesome/less/stacked.less
site_src/static/rmarkdown-libs/font-awesome/less/variables.less
site_src/static/rmarkdown-libs/font-awesome/scss/_animated.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_bordered-pulled.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_core.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_fixed-width.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_icons.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_larger.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_list.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_mixins.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_path.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_rotated-flipped.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_screen-reader.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_stacked.scss
site_src/static/rmarkdown-libs/font-awesome/scss/_variables.scss
site_src/static/rmarkdown-libs/font-awesome/scss/font-awesome.scss
site_src/vignettes/ggtree-ggimage.Rmd site_src/vignettes/ggtree-inset.Rmd tests/testthat.R tests/testthat/test-conversion.R tests/testthat/test-geom_balance.R tests/testthat/test-geom_cladelabel.R tests/testthat/test-group.R tests/testthat/test-xlim_expand.R
vignettes/figures/fan_layout.gif
vignettes/figures/ggtree_objects.png
vignettes/figures/ggtree_objects_v2.png
vignettes/figures/phangorn_example.png
vignettes/figures/phylobase_example.png
vignettes/figures/rotate_clade.gif
vignettes/figures/rotate_tree.gif
vignettes/ggtree.Rmd
vignettes/ggtree.bib
vignettes/treeAnnotation.Rmd vignettes/treeManipulation.Rmd vignettes/treeVisualization.Rmd
GuangchuangYu/ggtree documentation built on Jan. 9, 2018, 7:08 a.m.