meshSim: meshSim

In GuangchuangYu/meshes: MeSH Enrichment and Semantic analyses

meshSim

Description

semantic similarity between two MeSH term vectors

Usage

meshSim(meshID1, meshID2, measure = "Wang", semData)

Arguments

meshID1	MeSH term vector
meshID2	MeSH term vector
measure	one of "Wang", "Resnik", "Rel", "Jiang" and "Lin"
semData	annotation data for semantic measurement, output by meshdata function

Value

score matrix

Author(s)

Guangchuang Yu https://guangchuangyu.github.io

Examples

## library(meshes)
## library(AnnotationHub)
## ah <- AnnotationHub()
## qr_hsa <- query(ah, c("MeSHDb", "Homo sapiens"))
## filepath_hsa <- qr_hsa[[1]]
## db <- MeSHDbi::MeSHDb(filepath_hsa)
## hsamd <- meshdata(db, category='A', computeIC=T, database="gendoo")
data(hsamd)
meshSim("D000009", "D009130", semData=hsamd, measure="Resnik")

GuangchuangYu/meshes documentation built on Feb. 9, 2024, 3:05 a.m.